Welcome to warwick-covid-transmission’s documentation!

• List of Epidemiology Models
  • Warwick-Lancaster Model
    • WarwickLancSEIRModel
      • WarwickLancSEIRModel.age_groups_names()
      • WarwickLancSEIRModel.check_death_format()
      • WarwickLancSEIRModel.check_new_deaths_format()
      • WarwickLancSEIRModel.check_new_hospitalisation_format()
      • WarwickLancSEIRModel.check_positives_format()
      • WarwickLancSEIRModel.loglik_deaths()
      • WarwickLancSEIRModel.loglik_positive_tests()
      • WarwickLancSEIRModel.mean_deaths()
      • WarwickLancSEIRModel.mean_positives()
      • WarwickLancSEIRModel.n_outputs()
      • WarwickLancSEIRModel.n_parameters()
      • WarwickLancSEIRModel.new_deaths()
      • WarwickLancSEIRModel.new_hospitalisations()
      • WarwickLancSEIRModel.new_infections()
      • WarwickLancSEIRModel.new_total_infections()
      • WarwickLancSEIRModel.output_names()
      • WarwickLancSEIRModel.parameter_names()
      • WarwickLancSEIRModel.read_contact_data()
      • WarwickLancSEIRModel.read_regional_data()
      • WarwickLancSEIRModel.region_names()
      • WarwickLancSEIRModel.samples_deaths()
      • WarwickLancSEIRModel.samples_positive_tests()
      • WarwickLancSEIRModel.set_age_groups()
      • WarwickLancSEIRModel.set_outputs()
      • WarwickLancSEIRModel.set_regions()
      • WarwickLancSEIRModel.simulate()
• Model Parameters Classes
  • Parameter Classes for the Warwick-Lancaster Model
  • Initial Conditions Parameters
    • ICs
      • ICs.total_population()
  • Regional and Time Dependent Parameters
    • RegParameters
  • Disease Specific Parameters
    • DiseaseParameters
  • Transmission Specific Parameters
    • Transmission
  • Simulation Method Parameters
    • SimParameters
  • Vaccination Parameters
    • VaccineParameters
  • Social Distancing Parameters
    • SocDistParameters
  • Parameters Controller
    • ParametersController

Indices and tables

• Search Page